Tag Archive for 'RSS'

What’s New in Pubmed? Nothing!

There’s a long-standing problem with trying to follow the literature on MSCs. The more proper name is “multipotent stromal cells“, whereas the name many people still use is “mesenchymal stem cells”. There’s also plenty of literature, on what is presumably the same cells, that uses “marrow stromal cells”.

To try to get around this problem in the past, I used the MeSH Browser to find the preferred term for relevant categories, searched on that, and created a feed from those results. That quit working about a month ago. According to the feed for “Multipotent Stem Cells”[mh] OR “Adult Stem Cells”[mh] OR “Mesenchymal Stem Cells”[mh], nothing is new since the first week of November. I see today there’s an announcement from about their update to MeSH for 2008, so I’m guessing there may be some connection between the two.

In the new hierarchy, multipotent , mesenchymal , and adult are all under as distinct categories. Multipotent is defined as “specialized stem cells that are committed to give rise to cells that have a particular function” whereas mesenchymal is defined as “Cells that can develop into distinct mesenchymal tissue” and Adult is defined as “Cells with high proliferative and self renewal capacities derived from adults.” I don’t know how they derived these categories, but clearly they aren’t non-overlapping categories.

Here’s what I get when I run various queries:

MeSH no MeSH
mesenchymal 2180 3386
multipotent 708 857
Adult 261 642
all 3 with AND 3 6
all 3 with OR 3025 4671
difference of OR and summed individual results: 124 214

So both MeSH and keyword queries lose some results when combined, and though MeSH queries lose less, they lose less of a smaller set that doesn’t contain as up-to-date results. I guess I’ll have to subscribe to each feed separately, or maybe mash them together with Yahoo Pipes or something.

More info on Blogging Peer-reviewed Research Reporting

Last week, Bloggers for Peer-Reviewed Research Reporting announced a post-aggregation system for posts discussing peer-reviewed research only. They didn’t give any details of exactly how the aggregation system would work, so I bugged the people behind it via email.

Continue reading ‘More info on Blogging Peer-reviewed Research Reporting’

RSS feeds of literature queries

Hubmed - feeds of literature queries - updated daily.

Mass Spectrometry Blog likes the citation incidence plot and XML Resources for Molecular Biology. It’s great to see some of the new data technologies getting wider application.
Thanks for the great links, Dr. Murray.